In 2047, an unknown, alien life-form descends upon the Earth, destroying all the major cities in one fell swoop. The survivors unite and build a Diffusor to stop the Februus, the invaders the military would later codename the FOS, and a temporary peace is achieved. Jump forward to 2053, the present. PLANZET: The final plan, Plan Zed, to retake Planet Earth. A last, desperate counterattack against the enemy. Hiroshi Akishima, soldier in the Planetary Defense Forces Alliance, would like nothing better than a shot at the aliens responsible for his father's death six years ago. However, the new offensive requires the Diffusor to be dropped, leaving the entire planet terribly vulnerable once more. Will humanity regain the stars or lose everything in the final, ultimate gamble?

A 15-year-old boy travels back in time—over 1,200 years ago to the Heian period—and faces a war between oni (demons) and humans in the former Japanese capital of Kyoto.

For years, the Niflheim Empire and the kingdom of Lucis have been at war. The empire, having dominated most of the world of Eos, covets the power of the last known Crystal, which is held in Lucis' capital city, Insomnia. In order to protect his people from these advancing forces, King Regis Lucis Caelum CXIII used the power of the Crystal to surround Insomnia with a magical wall. Along with this barrier, Regis assembled an elite military task force known as the Kingsglaive. By drawing their power from the king, the Kingsglaive protect Lucis' borders from the onslaught of the empire and other forces that would do them harm. One such member of the Kingsglaive is Nyx, a man nicknamed "The Hero" by his fellow warriors due to his arrogance and desire to save everyone. However, his pride gets the better of him, causing him to disobey his captain's orders, resulting in a demotion. Now, Nyx spends his days guarding the city gates, but things begin to change once word gets out that Regis plans to sign a peace treaty with their sworn enemies.

A door opens, and a golden seal shatters a star. It is the early 21st century. Mankind has lost the battle for planet Earth to Godzilla, and has taken to the stars in search of a new home. But the search ends in vain, forcing them and their alien allies back to Earth. But 20,000 years have passed in their absence, and the Earth is a wholly different place. The planet's flora and fauna now embody and serve Godzilla. Earth is a monster's planet, ruled by the largest Godzilla ever at 300 meters in height. Godzilla Earth. Human protagonist, Captain Haruo, yearns to defeat Godzilla and retake the planet for mankind. There, he meets aboriginal descendants of the human race, the Houtua tribe. The Houtua twin sisters, Maina and Miana, lead him to the skeletal remains of Mecha-Godzilla, an old anti-Godzilla weapon, which to everyone's surprise is still alive in the form of self-generating nanometal. Taken from the Mecha-Godzilla carcass, the nanometals have gradually been rebuilding a "Mecha-Godzilla City," a potential weapon capable of destroying Godzilla Earth. As the strategy develops, a rift forms between the humans and the Bilusaludo, one of several alien races that had joined the humans on their exodus from Earth. Their leader, Galu-gu, believes that the secret to defeating Godzilla lies in the use of superhuman powers – namely, the nanometal integration – but Haruo resists, fearing that in defeating monsters, they must not become monsters themselves. Haruo ultimately uses his means for defeating Godzilla Earth to destroy the Mecha-Godzilla city so as to prevent nanometal assimilation, killing Galu-gu. However, his childhood friend, Yuuko, has been absorbed by the nanometal integration and has fallen into a brain dead coma. The human race, once again, is lost. Metphies, commander of the priestly alien race, Exif, marvels at the miraculous survival of Haruo, he begins to attract a following. The Exif has secretly harbored this outcome as their "ultimate goal." Miana and Maina issue warnings against Metphies, while Haruo begins to question mankind's next move. With no means for defeating Godzilla Earth, mankind watches as King Ghidorah, clad in a golden light, descends on the planet. The earth shakes once again with as war moves to a higher dimension. What is Godzilla exactly? Does mankind stand a chance? Is there a future vision in Haruo's eyes? Find out in the finale.